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The data of long-term ecological studies (1999–2014) are used for assessing the impact of a new Caspian invader Mnemiopsis leidyi A. Agassiz, 1865 on marine and anadromous fish species. The introduction of the ctenophore and its massive development in the Caspian Sea have mainly affected planktophagous fish, especially the most abundant species anchovy sprat (Clupeonella engrauliformis Borodin, 1904) and sturgeons (Family Acipenseridae). Mnemiopsis leidyi is one of the main negative factors preventing the restoration of the populations of Caspian fishes, especially anchovy tyulka. The critical state of the resources of the spawning parts of sturgeon populations (Family Acipenseridae) has been reinforced as a result of the massive development of M. leidyi.